sporecounter

sporecounter

Hypha analysis
Comparison

Load example dataset?

Do txt files contain headers?

DNA

Choose file - DNA profile

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Sigma value

Background percentage

Filtering threshold (%)

Use Markov smoothing?

Apply local filter?

Choose width of local filter

Choose ratio for local filter

Cell wall

Choose file - cell wall profile

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Sigma value

Background percentage

Filtering threshold

Use Markov smoothing?

Apply local filter?

Choose width of local filter

Choose ratio for local filter

Should boundary septs, chromosomes or spores be removed?

First chromosome Last chromosome First sept Last sept First spore Last spore

Remove specific spores? (names should be separated by commas)

Hypha id

Strain name (for later comparison)

Download result in txt format

Load txt result files

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Choose plot type

Histogram Boxplot Density plot

Choose binwidth for histogram

Choose width of microcompartment

Choose width of macrocompartment

Download combined result file in txt format

Data
Summary
Plots